naturepoker<p>Minimod preprint from <span class="h-card" translate="no"><a href="https://genomic.social/@hasindu2008" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>hasindu2008</span></a></span> gang is out. Code available <a href="https://github.com/warp9seq/minimod" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">github.com/warp9seq/minimod</span><span class="invisible"></span></a></p><p>I love the work they're doing with slow5/blow5 open spec for ONT raw data, and archive all internal reads using them. Really need to sit down and test this one out with my <a href="https://genomic.social/tags/archaea" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>archaea</span></a> raw data!</p><p><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/methylation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>methylation</span></a> <a href="https://genomic.social/tags/ONT" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ONT</span></a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a></p>
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#sequencing
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naturepoker<p>Our poster abstract for <a href="https://genomic.social/tags/ASMicrobe2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ASMicrobe2025</span></a> is up! First bit of info from our warehouse lab led Haloarchaea study project. Session EEB-P-302 - EEB02 Saturday Microbial Evolution. Please feel free to come say hi 👋</p><p><a href="https://genomic.social/tags/microbiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>microbiology</span></a> <a href="https://genomic.social/tags/archaea" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>archaea</span></a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a> <a href="https://genomic.social/tags/methylation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>methylation</span></a> </p><p><a href="https://www.abstractsonline.com/pp8/#!/20974/presentation/3670" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">abstractsonline.com/pp8/#!/209</span><span class="invisible">74/presentation/3670</span></a></p>
naturepoker<p>1 of 2 posters for the summer picked up! I'll be presenting this one at upcoming Boston Bacterial Meeting <a href="https://genomic.social/tags/BBM2025" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BBM2025</span></a>. </p><p>A specific type of plasmid replication gene (RPA) is overreprented among Deinococcota & analysis hints at introduction of the MGE early in its history, tracing back to Allomeiothermus <a href="https://genomic.social/tags/microbiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>microbiology</span></a> <a href="https://genomic.social/tags/amateurbiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>amateurbiology</span></a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a></p><p>Since this is polishing up of such an older data, I'd say it's the most amateur-like (in a good way) of all stuff coming out of our warehouse lab right now</p>
Healthcare Tech Robot<p>DATE: February 24, 2025 at 09:00AM<br>SOURCE: BioWorld MedTech</p><p>Direct article link at end of text block below.</p><p>.@Roche looks to grow with <a href="https://mastodon.clinicians-exchange.org/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a> by expansion tech</p><p><a href="https://t.co/tIO4Gf7hGr" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">t.co/tIO4Gf7hGr</span><span class="invisible"></span></a></p><p><a href="https://mastodon.clinicians-exchange.org/tags/medtech" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medtech</span></a> @illumina</p><p>Here are any URLs found in the article text: </p><p><a href="https://t.co/tIO4Gf7hGr" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">t.co/tIO4Gf7hGr</span><span class="invisible"></span></a></p><p><a href="https://mastodon.clinicians-exchange.org/tags/medtech" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medtech</span></a></p><p>Articles can be found by scrolling down the page at <a href="https://www.bioworld.com/topics/85-bioworld-medtech" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">bioworld.com/topics/85-bioworl</span><span class="invisible">d-medtech</span></a> . </p><p>-------------------------------------------------</p><p>Private, vetted email list for mental health professionals: <a href="https://www.clinicians-exchange.org" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">clinicians-exchange.org</span><span class="invisible"></span></a><br>.<br>NYU Information for Practice puts out 400-500 good quality health-related research posts per week but its too much for many people, so that bot is limited to just subscribers. You can read it or subscribe at <span class="h-card" translate="no"><a href="https://mastodon.clinicians-exchange.org/@PsychResearchBot" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>PsychResearchBot</span></a></span><br>.<br>Since 1991 The National Psychologist has focused on keeping practicing psychologists current with news, information and items of interest. Check them out for more free articles, resources, and subscription information: <a href="https://www.nationalpsychologist.com" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">nationalpsychologist.com</span><span class="invisible"></span></a><br>.<br>EMAIL DAILY DIGEST OF RSS FEEDS -- SUBSCRIBE:<br><a href="http://subscribe-article-digests.clinicians-exchange.org" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">http://</span><span class="ellipsis">subscribe-article-digests.clin</span><span class="invisible">icians-exchange.org</span></a><br>.<br>READ ONLINE: <a href="http://read-the-rss-mega-archive.clinicians-exchange.org" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">http://</span><span class="ellipsis">read-the-rss-mega-archive.clin</span><span class="invisible">icians-exchange.org</span></a><br>.<br>It's primitive... but it works... mostly...<br>.<br>-------------------------------------------------</p><p><a href="https://mastodon.clinicians-exchange.org/tags/healthcare" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>healthcare</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/healthtech" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>healthtech</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/healthcaretech" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>healthcaretech</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/healthtechnology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>healthtechnology</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/medgadget" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medgadget</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/medicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medicine</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/doctor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>doctor</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/hospital" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>hospital</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/medtech" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medtech</span></a></p>
Healthcare Tech Robot<p>DATE: February 21, 2025 at 07:00PM<br>SOURCE: BioWorld MedTech</p><p>Direct article link at end of text block below.</p><p>.@Roche looks to grow with <a href="https://mastodon.clinicians-exchange.org/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a> by expansion tech</p><p><a href="https://t.co/tIO4Gf7hGr" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">t.co/tIO4Gf7hGr</span><span class="invisible"></span></a></p><p><a href="https://mastodon.clinicians-exchange.org/tags/medtech" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medtech</span></a> @illumina</p><p>Here are any URLs found in the article text: </p><p><a href="https://t.co/tIO4Gf7hGr" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">t.co/tIO4Gf7hGr</span><span class="invisible"></span></a></p><p><a href="https://mastodon.clinicians-exchange.org/tags/medtech" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medtech</span></a></p><p>Articles can be found by scrolling down the page at <a href="https://www.bioworld.com/topics/85-bioworld-medtech" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">bioworld.com/topics/85-bioworl</span><span class="invisible">d-medtech</span></a> . </p><p>-------------------------------------------------</p><p>Private, vetted email list for mental health professionals: <a href="https://www.clinicians-exchange.org" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">clinicians-exchange.org</span><span class="invisible"></span></a><br>.<br>NYU Information for Practice puts out 400-500 good quality health-related research posts per week but its too much for many people, so that bot is limited to just subscribers. You can read it or subscribe at <span class="h-card" translate="no"><a href="https://mastodon.clinicians-exchange.org/@PsychResearchBot" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>PsychResearchBot</span></a></span><br>.<br>Since 1991 The National Psychologist has focused on keeping practicing psychologists current with news, information and items of interest. Check them out for more free articles, resources, and subscription information: <a href="https://www.nationalpsychologist.com" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">nationalpsychologist.com</span><span class="invisible"></span></a><br>.<br>EMAIL DAILY DIGEST OF RSS FEEDS -- SUBSCRIBE:<br><a href="http://subscribe-article-digests.clinicians-exchange.org" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">http://</span><span class="ellipsis">subscribe-article-digests.clin</span><span class="invisible">icians-exchange.org</span></a><br>.<br>READ ONLINE: <a href="http://read-the-rss-mega-archive.clinicians-exchange.org" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">http://</span><span class="ellipsis">read-the-rss-mega-archive.clin</span><span class="invisible">icians-exchange.org</span></a><br>.<br>It's primitive... but it works... mostly...<br>.<br>-------------------------------------------------</p><p><a href="https://mastodon.clinicians-exchange.org/tags/healthcare" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>healthcare</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/healthtech" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>healthtech</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/healthcaretech" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>healthcaretech</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/healthtechnology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>healthtechnology</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/medgadget" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medgadget</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/medicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medicine</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/doctor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>doctor</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/hospital" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>hospital</span></a> <a href="https://mastodon.clinicians-exchange.org/tags/medtech" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medtech</span></a></p>
naturepoker<p>For sequencing curious folks: a lab is trying to use up their last NextSeq 550 flowcell, and they're willing to run it for anyone for cost of the flowcell or less (likely a lot less). </p><p>Anyone interested in 30~39Gb worth of 150bp reads, let me know! We have about a week to figure this out.</p><p>Amateurs and independent researchers welcome too, but you'll have to extract your own DNA and send it to us. </p><p><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a> <a href="https://genomic.social/tags/microbiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>microbiology</span></a></p>
naturepoker<p>Very excited to dig into the paper - tool & methodology the authors developed could save lots of headaches for my current sequencing project. </p><p>Can anyone reach the linked GitHub URL on the published article though? Entire NanoConsensus repo seems to 404 on my end.<br><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a> </p><p>Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications in the A- and P-sites | Nature Communications<br><a href="https://www.nature.com/articles/s41467-024-54368-x" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/articles/s41467-024</span><span class="invisible">-54368-x</span></a></p>
naturepoker<p>Comparing what should be ONT r10 reads from two different third party sequencing providers.</p><p>Quality differences between the two are VERY noticeable, despite both companies likely using similar methods to keep the prices down. </p><p>I guess your choice of sequencing provider does matter! </p><p><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://genomic.social/tags/microbiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>microbiology</span></a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a></p>
Nonia Pariente<p>📣📣So excited to see this <a href="https://fediscience.org/tags/Consensus" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Consensus</span></a> View on a naming system for <a href="https://fediscience.org/tags/Dengue" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Dengue</span></a> <a href="https://fediscience.org/tags/lineages" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>lineages</span></a>!<br>With prevalence increasing globally and more <a href="https://fediscience.org/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a> being done, this was really needed</p><p>It includes tools to <a href="https://fediscience.org/tags/identify" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>identify</span></a> new lineages<br> <br>International authorship have agreed on naming convention to aid <a href="https://fediscience.org/tags/genomic" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomic</span></a> <a href="https://fediscience.org/tags/surveillance" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>surveillance</span></a> for <br>The authors have done an amazing job of reaching consensus here ⬇️⬇️</p><p><a href="https://plos.io/47C0hR9" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">plos.io/47C0hR9</span><span class="invisible"></span></a></p><p><a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PLOSBiology</span></a></p>
naturepoker<p>I have a big microbial sequencing batch coming up that will require decent methylation calling. </p><p>How's ONT vs PacBio on this front? R10's direct methylation detection is exactly what I'm looking for, but curious about first-hand experience from researchers for both platforms. </p><p><a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://genomic.social/tags/pacbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>pacbio</span></a></p>
naturepoker<p>Assembling this linear chromosome is really kicking my behind. Working with long-long reads, I'm pretty sure the darn thing is series of 2x/3x/4x copies of operons held together by repeat sequences. </p><p><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a></p>
Luke Pembleton<p>Shoutout to all those who went through the initial <a href="https://genomic.social/tags/NGS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NGS</span></a> era 🧬 Did you ever sit in the back of a lackluster seminar or lecture and ponder (admittedly delusionally) how you could design a better denovo <a href="https://genomic.social/tags/genome" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genome</span></a> assembler? 🧮</p><p><a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a></p>
Jeffrey Perkel<p>With its fast analyses and ultra-long reads, <a href="https://sciencemastodon.com/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://sciencemastodon.com/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a> has transformed genomics, transcriptomics and epigenomics. Now, nanopore protein analysis might be catching up. By <span class="h-card" translate="no"><a href="https://mastodon.online/@carolineseydel" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>carolineseydel</span></a></span> <span class="h-card" translate="no"><a href="https://mstdn.social/@Nature" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>Nature</span></a></span> <a href="https://www.nature.com/articles/d41586-024-01280-5" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/articles/d41586-024</span><span class="invisible">-01280-5</span></a></p>
Dr. Stephanie<p>Having switched servers, I should give another <a href="https://genomic.social/tags/intro" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>intro</span></a>: I’m a <a href="https://genomic.social/tags/geneticist" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>geneticist</span></a> with a background in <a href="https://genomic.social/tags/neuroscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>neuroscience</span></a>, <a href="https://genomic.social/tags/evodevo" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>evodevo</span></a>, <a href="https://genomic.social/tags/HumanGenetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>HumanGenetics</span></a>, and <a href="https://genomic.social/tags/MarineBio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MarineBio</span></a>. These days I work in <a href="https://genomic.social/tags/PublicHealth" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PublicHealth</span></a> and <a href="https://genomic.social/tags/epi" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>epi</span></a> spaces, doing <a href="https://genomic.social/tags/DataScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DataScience</span></a>, <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a>, and <a href="https://genomic.social/tags/rnd" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>rnd</span></a>, usually in <a href="https://genomic.social/tags/R" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>R</span></a>. I used to be a <a href="https://genomic.social/tags/sysadmin" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sysadmin</span></a>, for my sins. </p><p><a href="https://genomic.social/tags/PunkMusic" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PunkMusic</span></a>, punk ethos, all things <a href="https://genomic.social/tags/ocean" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ocean</span></a>, cranky lefty <a href="https://genomic.social/tags/politics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>politics</span></a>, <a href="https://genomic.social/tags/cocktails" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cocktails</span></a>, <a href="https://genomic.social/tags/ttrpg" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ttrpg</span></a>, and <a href="https://genomic.social/tags/baking" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>baking</span></a> are all pretty much guaranteed if you stick around.</p>
Laura White<p>Wrote a little primer with Jay Hesselberth for biologists looking to id <a href="https://genomic.social/tags/DNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DNA</span></a> & <a href="https://genomic.social/tags/RNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RNA</span></a> modifications w/ <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a>. I'm particularly proud of the table of which modifications anyone's thrown into a pore yet. It took me a minute to get my head around this fast changing field (I prepped my first MinION library in August 2021!), so hopefully this helps others.</p><p><a href="https://www.frontiersin.org/articles/10.3389/fgene.2022.1037134/full" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">frontiersin.org/articles/10.33</span><span class="invisible">89/fgene.2022.1037134/full</span></a></p>
Arjan Boltjes<p><a href="https://mastodon.social/tags/introduction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>introduction</span></a> Long overdue, but here goes:</p><p>I'm Arjan, during working hours researching a specific children's <a href="https://mastodon.social/tags/cancer" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cancer</span></a>, <a href="https://mastodon.social/tags/neuroblastoma" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>neuroblastoma</span></a>, mostly by means of <a href="https://mastodon.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> analyses of <a href="https://mastodon.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a> data; right now lots of <a href="https://mastodon.social/tags/scRNAseq" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>scRNAseq</span></a> . I might occasionally toot about this, or related stuff like <a href="https://mastodon.social/tags/immunology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>immunology</span></a> , <a href="https://mastodon.social/tags/rstats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>rstats</span></a> , <a href="https://mastodon.social/tags/atherosclerosis" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>atherosclerosis</span></a> and other scientific interests and/or fields that I've worked in.</p>
samstudio8<p>Hello <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> tooters! I didn't want to miss all the fun of uprooting my digital social life so here's my <a href="https://genomic.social/tags/introduction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>introduction</span></a> to the fediverse! I build <a href="https://genomic.social/tags/nextflow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nextflow</span></a> pipelines and tools for analysing <a href="https://genomic.social/tags/oxford" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>oxford</span></a> <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a> <a href="https://genomic.social/tags/genomic" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomic</span></a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a> data. You can expect angry messages about elusive <a href="https://genomic.social/tags/programming" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>programming</span></a> bugs, write ups of my adventures with building <a href="https://genomic.social/tags/electronics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>electronics</span></a> tat, and pictures of tasty <a href="https://genomic.social/tags/burgers" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>burgers</span></a>.</p>
Amanda Warr :rna:<p>Jumping on the <a href="https://genomic.social/tags/introductions" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>introductions</span></a> bandwagon:</p><p>I'm a Discovery Fellow at the Roslin Institute looking at gut <a href="https://genomic.social/tags/microbiome" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>microbiome</span></a> vs susceptibility to <a href="https://genomic.social/tags/viruses" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>viruses</span></a> in pigs. You can expect me to talk about <a href="https://genomic.social/tags/ResearchCulture" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ResearchCulture</span></a>, <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>sequencing</span></a>, <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a>, <a href="https://genomic.social/tags/assembly" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>assembly</span></a> and <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nanopore</span></a>. You can also expect <a href="https://genomic.social/tags/cat" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cat</span></a> photos, because cats rule my life when sequencers don't. Hobbies include <a href="https://genomic.social/tags/cycling" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cycling</span></a>, <a href="https://genomic.social/tags/baking" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>baking</span></a>, <a href="https://genomic.social/tags/ColdWaterSwimming" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ColdWaterSwimming</span></a> and <a href="https://genomic.social/tags/3DPrinting" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>3DPrinting</span></a>.</p>
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