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#phenotyping

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crop science<p>!!! NEW DATASET !!!</p><p>The Field Phenotyping Platform 1.0 is now available - a massive open dataset for winter <a href="https://scicomm.xyz/tags/wheat" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wheat</span></a> research combining imaging, trait, environmental &amp; genetic data!</p><p>📊 What's included:</p><p>- 4,000+ wheat plots across 6 years <br>- 153,000+ high-resolution aligned images <br>- 8 key traits: canopy cover, plant height, head counts, senescence, heading date, yield &amp; protein content <br>- Genetic markers + environmental data <br>- Time-series format perfect for modeling</p><p>🎯 What it can be used for:</p><p>- <a href="https://scicomm.xyz/tags/CropModeling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CropModeling</span></a> &amp; phenotyping method development <br>- Genotype-environment interaction studies <br>- Growth dynamics analysis <br>- <a href="https://scicomm.xyz/tags/MachineLearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MachineLearning</span></a> applications in agriculture<br>- Genomic prediction research</p><p>This comprehensive resource bridges <a href="https://scicomm.xyz/tags/PlantScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PlantScience</span></a> and <a href="https://scicomm.xyz/tags/AI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AI</span></a> communities, accelerating research in climate-adaptive agriculture 🌱</p><p>Open access paper: <a href="https://doi.org/10.1093/gigascience/giaf051" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1093/gigascience/gi</span><span class="invisible">af051</span></a></p><p><a href="https://scicomm.xyz/tags/OpenScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenScience</span></a> <a href="https://scicomm.xyz/tags/Agriculture" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Agriculture</span></a> <a href="https://scicomm.xyz/tags/DataScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DataScience</span></a> <a href="https://scicomm.xyz/tags/ClimateChange" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ClimateChange</span></a> <a href="https://scicomm.xyz/tags/CropImprovement" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CropImprovement</span></a> <a href="https://scicomm.xyz/tags/Phenotyping" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Phenotyping</span></a> <a href="https://scicomm.xyz/tags/OpenData" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenData</span></a></p>
Donald Hobern<p>Readvertising a <a href="https://scicomm.xyz/tags/vacancy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>vacancy</span></a> for a <a href="https://scicomm.xyz/tags/Python" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Python</span></a> <a href="https://scicomm.xyz/tags/SoftwareDeveloper" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SoftwareDeveloper</span></a> with the right to work in <a href="https://scicomm.xyz/tags/Australia" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Australia</span></a> and experience in setting up <a href="https://scicomm.xyz/tags/S3" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>S3</span></a> storage for use as a research <a href="https://scicomm.xyz/tags/DataRepository" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DataRepository</span></a>.</p><p><a href="https://careers.adelaide.edu.au/cw/en/job/516522/appn-software-engineer-repository-services" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">careers.adelaide.edu.au/cw/en/</span><span class="invisible">job/516522/appn-software-engineer-repository-services</span></a> </p><p>The role will include responsibility to set up and manage the storage, including interfaces to upload packaged datasets and metadata and landing pages for data access. This is a core component in our <a href="https://scicomm.xyz/tags/FAIR" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>FAIR</span></a> <a href="https://scicomm.xyz/tags/data" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>data</span></a> pipeline for <a href="https://scicomm.xyz/tags/plant" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>plant</span></a> <a href="https://scicomm.xyz/tags/phenotyping" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>phenotyping</span></a> data.</p>
UK<p><a href="https://www.europesays.com/uk/90016/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">europesays.com/uk/90016/</span><span class="invisible"></span></a> Genomics could hold the key to stroke risk, U of A researchers say <a href="https://pubeurope.com/tags/AI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AI</span></a> <a href="https://pubeurope.com/tags/ArtificialIntelligence" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ArtificialIntelligence</span></a> <a href="https://pubeurope.com/tags/biobanks" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biobanks</span></a> <a href="https://pubeurope.com/tags/BiologicalSciences" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>BiologicalSciences</span></a> <a href="https://pubeurope.com/tags/CanadaResearchChairs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CanadaResearchChairs</span></a> <a href="https://pubeurope.com/tags/DavidWishart" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DavidWishart</span></a> <a href="https://pubeurope.com/tags/Epigenetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Epigenetics</span></a> <a href="https://pubeurope.com/tags/Genetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Genetics</span></a> <a href="https://pubeurope.com/tags/Genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Genomics</span></a> <a href="https://pubeurope.com/tags/GlenJickling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GlenJickling</span></a> <a href="https://pubeurope.com/tags/LaboratoryMedicine" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>LaboratoryMedicine</span></a> <a href="https://pubeurope.com/tags/metabolomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metabolomics</span></a> <a href="https://pubeurope.com/tags/Neurology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Neurology</span></a> <a href="https://pubeurope.com/tags/phenotyping" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>phenotyping</span></a> <a href="https://pubeurope.com/tags/proteomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>proteomics</span></a> <a href="https://pubeurope.com/tags/Science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Science</span></a> <a href="https://pubeurope.com/tags/stroke" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>stroke</span></a> <a href="https://pubeurope.com/tags/Transcriptomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Transcriptomics</span></a> <a href="https://pubeurope.com/tags/UK" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>UK</span></a> <a href="https://pubeurope.com/tags/UnitedKingdom" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>UnitedKingdom</span></a></p>
Donald Hobern<p>The Australian National University in <a href="https://scicomm.xyz/tags/Canberra" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Canberra</span></a> is advertising a position for a Data Lead to help deliver <a href="https://scicomm.xyz/tags/FAIR" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>FAIR</span></a> <a href="https://scicomm.xyz/tags/metadata" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metadata</span></a> and <a href="https://scicomm.xyz/tags/data" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>data</span></a> from their Australian <a href="https://scicomm.xyz/tags/Plant" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Plant</span></a> <a href="https://scicomm.xyz/tags/Phenotyping" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Phenotyping</span></a> <a href="https://scicomm.xyz/tags/Network" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Network</span></a> node. They grow (mainly crop) plants under controlled conditions, measuring <a href="https://scicomm.xyz/tags/environment" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>environment</span></a> and imaging the plants, then process the imagery to derive <a href="https://scicomm.xyz/tags/trait" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>trait</span></a> data to support research. Data from all stages needs to be organised for long-term reuse and interoperability.</p><p><a href="https://jobs.anu.edu.au/jobs/data-lead-canberra-act-act-australia" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">jobs.anu.edu.au/jobs/data-lead</span><span class="invisible">-canberra-act-act-australia</span></a></p>
Bose-Einstein-Kondensat<p>Phenotype-o-mat: A low-cost <a href="https://mstdn.social/tags/OpenSource" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenSource</span></a> <a href="https://mstdn.social/tags/DIY" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DIY</span></a> <a href="https://mstdn.social/tags/PlateReader" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PlateReader</span></a> for high-throughput <a href="https://mstdn.social/tags/phenotype" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>phenotype</span></a> measurements:<br>Web: <a href="https://dx.doi.org/10.17504/protocols.io.yxmvm3r3ol3p/v1" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">dx.doi.org/10.17504/protocols.</span><span class="invisible">io.yxmvm3r3ol3p/v1</span></a><br>GitHub: <a href="https://github.com/Arcadia-Science/arcadia-phenotypeomat-protocol" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/Arcadia-Science/arc</span><span class="invisible">adia-phenotypeomat-protocol</span></a><br><a href="https://mstdn.social/tags/DIYbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DIYbio</span></a> <a href="https://mstdn.social/tags/lab" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>lab</span></a> <a href="https://mstdn.social/tags/instruments" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>instruments</span></a> <a href="https://mstdn.social/tags/phenotyping" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>phenotyping</span></a> <a href="https://mstdn.social/tags/3Dprinted" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>3Dprinted</span></a> <a href="https://mstdn.social/tags/imaging" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>imaging</span></a> <a href="https://mstdn.social/tags/LED" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>LED</span></a> <a href="https://mstdn.social/tags/Arduino" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Arduino</span></a></p>