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#Bioconductor

3 posts3 participants1 post today
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Bioconductor

📝 New blog post: Bioconductor and ggplot2 4.0.0 – What’s Changing and How to Prepare

A major ggplot2 update (v4.0.0) is coming and may affect many Bioconductor packages. This post explains what’s changing, how to test your packages, and where to get help.

📖 Read more: blog.bioconductor.org/posts/20

Bioconductor community blogBioconductor and ggplot2 4.0.0: What’s Changing and How to Prepare – Bioconductor community blogPreparing for the upcoming update - key changes, potential breakages, and what developers and users can do
#Bioconductor#RStats#ggplot2
Public
Bioconductor

🎉 Two weeks in, and our move from Slack to Zulip is going great.
Thanks to everyone in the Bioconductor community for helping make the switch smooth and getting involved in the new space.

If you haven’t joined yet, come take a look:
➡️ chat.bioconductor.org
📖 blog.bioconductor.org/posts/20

Big thanks to the fosstodon.org/@zulip team for supporting open-source communities.

Zulipcommunity-biocWelcome to the Bioconductor Zulip space! | We’ve moved from Slack to Zulip to ensure sustainable, searchable, and open communication for our community. | Why we moved * If you had a Bioconductor Slack account, click “Already have an account? Log in", then "Forgot your password?” and enter your Slack email to set a new Zulip password. | If you had a Bioconductor Slack account, click “Already have an account? Log in", then "Forgot your password?” and enter your Slack email to set a new Zulip password.
#Bioconductor#RStats#OpenSource
Public
Bioconductor

📝 New Bioconductor Blog Post!

We’ve just launched the first in a new series by Vince Carey, founding contributor to Bioconductor and core developer, exploring the evolving complexity and value of the Bioconductor ecosystem.

Check it out 👉 blog.bioconductor.org/posts/20

Bioconductor community blogAsk and you shall receive – Bioconductor community blogDiscussion of evolving complexity and value of the Bioconductor ecosystem.
#Bioconductor#RStats#Bioinformatics
Public
Bioconductor

Announcing our first GBCC2025 keynote speaker: Charlotte Soneson!

Charlotte is a leading computational biologist at the Friedrich Miescher Institute in Basel, Switzerland, and she is renowned for her contributions to the Bioconductor project and the development of bioinformatics tools like einprot. Recipient of the Bioconductor Award (2021) and Ruth Chiquet Prize (2023), Charlotte's talk is not to be missed!

Learn more: csoneson.github.io/

csoneson.github.ioCharlotte Soneson
#GBCC2025#Bioconductor#UseGalaxy
Public
Bioconductor

🎓 New Publication!

Our first paper on Bioconductor training from the Bioconductor Training Committee is now published in PLOS Computational Biology. We're pleased to share our work with the community.

Read here: journals.plos.org/ploscompbiol

Thank you to everyone involved for your contributions!

journals.plos.orgLearning and teaching biological data science in the Bioconductor communityModern biological research is increasingly data-intensive, leading to a growing demand for effective training in biological data science. In this article, we provide an overview of key resources and best practices available within the Bioconductor project—an open-source software community focused on omics data analysis. This guide serves as a valuable reference for both learners and educators in the field.
#Bioconductor#RStats#Bioinformatics
Public
galaxyproject

🎓 GBCC2025 Training Topics 🌟

GBCC2025 is coming soon! We want to hear from you:

- Topics you're interested in learning about
- Interest in leading a session

Fill out the form by March 21st to help shape our training schedule!

🔗 forms.gle/i34Ag8SHMtBAmpPh7

Thanks! 🙏

For more information about the Galaxy Bioconductor Community Conference (June 23 - 26, 2025), see the GBCC2025 website: gbcc2025.org

Google DocsExpression of interest for GBCC2025 training topicsGBCC2025 is coming up soon and we'd like to hear from you! This year, we're doing things a little differently with our joint conference between Galaxy and Bioconductor. There will be 10 training sessions, each lasting 1.5 hours. Please fill out this form to: Indicate the topics you are interested in learning about at GBCC this year. Express your interest in leading a training session (optional). Note: This year, there are no abstract submissions for package demos or workshops, only talks and posters. If you want to lead a training session, please use this form. If you're interested in giving a talk or presenting a poster, please submit through the conference abstract submission page. Fill out this form by Friday, March 21st, so that we can create a training schedule that better serves all of us in the Galaxy and Bioconductor community. Thank you for your input! The GBCC2025 Organizing Committee
#GBCC2025#Bioconductor#DataScience
Public
Bioconductor

🎓 GBCC2025 Training Topics 🌟

GBCC2025 is coming soon! We want to hear from you:

- Topics you're interested in learning about
- Interest in leading a session

Fill out the form by March 21st to help shape our training schedule!

🔗 buff.ly/vCQw8pR

Thanks! 🙏

Google DocsExpression of interest for GBCC2025 training topicsGBCC2025 is coming up soon and we'd like to hear from you! This year, we're doing things a little differently with our joint conference between Galaxy and Bioconductor. There will be 10 training sessions, each lasting 1.5 hours. Please fill out this form to: Indicate the topics you are interested in learning about at GBCC this year. Express your interest in leading a training session (optional). Note: This year, there are no abstract submissions for package demos or workshops, only talks and posters. If you want to lead a training session, please use this form. If you're interested in giving a talk or presenting a poster, please submit through the conference abstract submission page. Fill out this form by Friday, March 21st, so that we can create a training schedule that better serves all of us in the Galaxy and Bioconductor community. Thank you for your input! The GBCC2025 Organizing Committee
#GBCC2025#Bioconductor#UseGalaxy
Public
Bioconductor

📅 The tidyomics group's next meeting is on Wednesday, March 12th at 4 PM NY / 9 PM London / 8 AM (Thursday) Melbourne. They'll discuss enhancing the SummarizedExperiment display and seek feedback on the tidyprint package. Check Bioconductor Slack #tidiness-in-bioc channel or Bioconductor events page calendar for more info: buff.ly/rdhL3jL

buff.lyBioconductor - EventsThe Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists.
#Bioconductor#Tidyomics#Bioinformatics
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