Miguel Correa<p>New preprint, with a modest contribution from yours truly, on proteo-transcriptomic changes in the aging mammalian brain.</p><p><a href="https://www.biorxiv.org/content/10.1101/2025.08.14.669896v1" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">biorxiv.org/content/10.1101/20</span><span class="invisible">25.08.14.669896v1</span></a></p><p><a href="https://fediscience.org/tags/SystemsBiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SystemsBiology</span></a> <a href="https://fediscience.org/tags/Proteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Proteomics</span></a> <a href="https://fediscience.org/tags/Transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Transcriptomics</span></a> <a href="https://fediscience.org/tags/neuroscience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>neuroscience</span></a></p>
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#Transcriptomics
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Bytes Europe<p>Immunotherapy shows promise in changing leukemia’s cellular environment <a href="https://www.byteseu.com/1238215/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">byteseu.com/1238215/</span><span class="invisible"></span></a> <a href="https://pubeurope.com/tags/AcuteMyeloidLeukemia" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AcuteMyeloidLeukemia</span></a> <a href="https://pubeurope.com/tags/Blood" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Blood</span></a> <a href="https://pubeurope.com/tags/BloodCancer" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BloodCancer</span></a> <a href="https://pubeurope.com/tags/Bone" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bone</span></a> <a href="https://pubeurope.com/tags/BoneMarrow" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BoneMarrow</span></a> <a href="https://pubeurope.com/tags/Cancer" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Cancer</span></a> <a href="https://pubeurope.com/tags/Cell" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Cell</span></a> <a href="https://pubeurope.com/tags/environment" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>environment</span></a> <a href="https://pubeurope.com/tags/Genes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genes</span></a> <a href="https://pubeurope.com/tags/Genomic" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genomic</span></a> <a href="https://pubeurope.com/tags/ImmuneSystem" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ImmuneSystem</span></a> <a href="https://pubeurope.com/tags/Immunotherapy" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Immunotherapy</span></a> <a href="https://pubeurope.com/tags/Leukemia" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Leukemia</span></a> <a href="https://pubeurope.com/tags/Medicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Medicine</span></a> <a href="https://pubeurope.com/tags/MyeloidLeukemia" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MyeloidLeukemia</span></a> <a href="https://pubeurope.com/tags/Research" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Research</span></a> <a href="https://pubeurope.com/tags/Transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Transcriptomics</span></a></p>
amen zwa, esq.<p>My son, Ronan, who is double-majoring in <a href="https://mathstodon.xyz/tags/biochemistry" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biochemistry</span></a> and <a href="https://mathstodon.xyz/tags/physics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>physics</span></a>, is working at Georgetown University in DC this summer, on a <a href="https://mathstodon.xyz/tags/cancer" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cancer</span></a> research internship. His work focuses on <a href="https://mathstodon.xyz/tags/cell" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cell</span></a>-type <a href="https://mathstodon.xyz/tags/deconvolution" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>deconvolution</span></a> in spatial <a href="https://mathstodon.xyz/tags/transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>transcriptomics</span></a>.</p><p>I know nothing about biology, but I am assisting him with deconvolution. My MathsTodon friends, have you any guidance to offer, either in mathematics or in biology?</p>
Bytes Europe<p>SAMBAI Selects Akoya’s PhenoCycler-Fusion Spatial Proteomics Technology for Large-Scale Cancer Study <a href="https://www.byteseu.com/888501/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">byteseu.com/888501/</span><span class="invisible"></span></a> <a href="https://pubeurope.com/tags/AkoyaBiosciences" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AkoyaBiosciences</span></a> <a href="https://pubeurope.com/tags/Cancer" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Cancer</span></a> <a href="https://pubeurope.com/tags/cancers" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cancers</span></a> <a href="https://pubeurope.com/tags/News" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>News</span></a> <a href="https://pubeurope.com/tags/Phenocycleru00aeFusionSystem" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Phenocycleru00aeFusionSystem</span></a> <a href="https://pubeurope.com/tags/Proteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Proteomics</span></a> <a href="https://pubeurope.com/tags/SpatialGenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SpatialGenomics</span></a> <a href="https://pubeurope.com/tags/Technology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Technology</span></a> <a href="https://pubeurope.com/tags/topics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>topics</span></a> <a href="https://pubeurope.com/tags/Transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Transcriptomics</span></a> <a href="https://pubeurope.com/tags/TranslationalMedicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>TranslationalMedicine</span></a></p>
Europe Says<p><a href="https://www.europesays.com/1964604/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">europesays.com/1964604/</span><span class="invisible"></span></a> SAMBAI Selects Akoya’s PhenoCycler-Fusion Spatial Proteomics Technology for Large-Scale Cancer Study <a href="https://pubeurope.com/tags/AkoyaBiosciences" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>AkoyaBiosciences</span></a> <a href="https://pubeurope.com/tags/america" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>america</span></a> <a href="https://pubeurope.com/tags/cancer" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cancer</span></a> <a href="https://pubeurope.com/tags/cancers" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cancers</span></a> <a href="https://pubeurope.com/tags/News" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>News</span></a> <a href="https://pubeurope.com/tags/Phenocycleru00aeFusionSystem" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Phenocycleru00aeFusionSystem</span></a> <a href="https://pubeurope.com/tags/Proteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Proteomics</span></a> <a href="https://pubeurope.com/tags/science" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>science</span></a> <a href="https://pubeurope.com/tags/SpatialGenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SpatialGenomics</span></a> <a href="https://pubeurope.com/tags/technology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>technology</span></a> <a href="https://pubeurope.com/tags/topics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>topics</span></a> <a href="https://pubeurope.com/tags/Transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Transcriptomics</span></a> <a href="https://pubeurope.com/tags/TranslationalMedicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>TranslationalMedicine</span></a> <a href="https://pubeurope.com/tags/UnitedStates" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UnitedStates</span></a> <a href="https://pubeurope.com/tags/UnitedStatesOfAmerica" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>UnitedStatesOfAmerica</span></a> <a href="https://pubeurope.com/tags/US" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>US</span></a> <a href="https://pubeurope.com/tags/USA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>USA</span></a></p>
Alberto Perez-Posada<p>I am very happy to announce that our work on hemichordate gene expression and chromatin accessibility dynamics is now published on Nature Ecology and Evolution! <a href="https://www.nature.com/articles/s41559-024-02562-x" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/articles/s41559-024</span><span class="invisible">-02562-x</span></a></p><p><a href="https://genomic.social/tags/science" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>science</span></a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a> <a href="https://genomic.social/tags/evolution" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>evolution</span></a> <a href="https://genomic.social/tags/deuterostomes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>deuterostomes</span></a> <a href="https://genomic.social/tags/transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>transcriptomics</span></a> <a href="https://genomic.social/tags/chromatin" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>chromatin</span></a> <a href="https://genomic.social/tags/grn" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>grn</span></a> <a href="https://genomic.social/tags/nature" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>nature</span></a> <a href="https://genomic.social/tags/evodevo" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>evodevo</span></a> <a href="https://genomic.social/tags/development" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>development</span></a> <a href="https://genomic.social/tags/developmentalbiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>developmentalbiology</span></a> <a href="https://genomic.social/tags/biology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biology</span></a></p>
Lluís Revilla<p><span class="h-card" translate="no"><a href="https://genomic.social/@lwpembleton" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>lwpembleton</span></a></span> <span class="h-card" translate="no"><a href="https://fosstodon.org/@grrrck" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>grrrck</span></a></span> <span class="h-card" translate="no"><a href="https://rstats.me/@adamhsparks" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>adamhsparks</span></a></span> <span class="h-card" translate="no"><a href="https://fosstodon.org/@defuneste" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>defuneste</span></a></span> <span class="h-card" translate="no"><a href="https://rstats.me/@danwwilson" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>danwwilson</span></a></span> <span class="h-card" translate="no"><a href="https://fosstodon.org/@milesmcbain" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>milesmcbain</span></a></span> <span class="h-card" translate="no"><a href="https://aus.social/@njtierney" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>njtierney</span></a></span> <span class="h-card" translate="no"><a href="https://aus.social/@jimjamslam" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>jimjamslam</span></a></span> the workstation at work (ubuntu 22, 24 cores, 125GB RAM memory, 2TB storage). Working very well for omics analysis <a href="https://fosstodon.org/tags/single_cell" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>single_cell</span></a> <a href="https://fosstodon.org/tags/scRNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>scRNA</span></a>, <a href="https://fosstodon.org/tags/methylation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>methylation</span></a> and <a href="https://fosstodon.org/tags/transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>transcriptomics</span></a> <a href="https://fosstodon.org/tags/ShareYourSetup" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ShareYourSetup</span></a></p>
Dr. Robert M Flight<p>Does anyone know where the @bioconductor {estrogen} dataset is derived from?</p><p><a href="https://www.bioconductor.org/packages/release/data/experiment/html/estrogen.html" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">bioconductor.org/packages/rele</span><span class="invisible">ase/data/experiment/html/estrogen.html</span></a></p><p>The vignette doesn't really give any details on what the time component is, for example. And I'm sure these are probably sub-samples from an actual experiment that was published somewhere, but I'd love to know where from if it's actually published.</p><p><a href="https://mastodon.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://mastodon.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioconductor</span></a> <a href="https://mastodon.social/tags/Transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Transcriptomics</span></a></p>
Tim Downing<p>Very happy that our review paper "A primer on <a href="https://genomic.social/tags/correlation" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>correlation</span></a>-based <a href="https://genomic.social/tags/dimension" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>dimension</span></a> <a href="https://genomic.social/tags/reduction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>reduction</span></a> methods for <a href="https://genomic.social/tags/multi" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>multi</span></a>-omics analysis" is out. Thanks to the reviewers & journal too for their help.</p><p><a href="https://royalsocietypublishing.org/doi/10.1098/rsif.2023.0344" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">royalsocietypublishing.org/doi</span><span class="invisible">/10.1098/rsif.2023.0344</span></a><br> <br><a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a> <a href="https://genomic.social/tags/omics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>omics</span></a> <a href="https://genomic.social/tags/systems" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>systems</span></a> <a href="https://genomic.social/tags/data" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>data</span></a> <a href="https://genomic.social/tags/model" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>model</span></a> <a href="https://genomic.social/tags/modelling" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>modelling</span></a> <a href="https://genomic.social/tags/biology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>biology</span></a> <a href="https://genomic.social/tags/transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>transcriptomics</span></a></p>
Isabelle Stévant<p>Hey there!<br>I'm a French researcher in developmental biology, focusing on mammalian sex determination and gonadal development at the genetic level. I have a PhD in bioinformatics but I do wet and dry lab.<br>I am a free (as in freedom) and open source software advocate, formerly actively involved in FOSS groups.<br>I love dataviz, photography, classic rock music, and playing video games.<br>I moved from another Mastodon instance.<br><a href="https://genomic.social/tags/introductions" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>introductions</span></a> <a href="https://genomic.social/tags/stem" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>stem</span></a> <a href="https://genomic.social/tags/DevBio" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DevBio</span></a> <a href="https://genomic.social/tags/genetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genetics</span></a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a> <a href="https://genomic.social/tags/transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>transcriptomics</span></a> <a href="https://genomic.social/tags/SexDet" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SexDet</span></a></p>
Luca Visentin<p>I forgot to do this, so here it is:<br>Hello <a href="https://genomic.social/tags/mastodon" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>mastodon</span></a>! I'm Luca, a <a href="https://genomic.social/tags/PhD" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PhD</span></a> student in <a href="https://genomic.social/tags/complexsystems" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>complexsystems</span></a> at the University of Turin (<a href="https://genomic.social/tags/unito" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>unito</span></a>).</p><p>I mainly work in <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a> and <a href="https://genomic.social/tags/transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>transcriptomics</span></a>. My project involves the study of the <a href="https://genomic.social/tags/cancer" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cancer</span></a> <a href="https://genomic.social/tags/transportome" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>transportome</span></a>, and its role in the overall <a href="https://genomic.social/tags/cellbiology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>cellbiology</span></a>.<br>I code in <a href="https://genomic.social/tags/python" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>python</span></a> and <a href="https://genomic.social/tags/R" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>R</span></a>, but i'm trying to (slowly) learn about <a href="https://genomic.social/tags/rustlang" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>rustlang</span></a>. I use <a href="https://genomic.social/tags/archlinux" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>archlinux</span></a>, btw.</p><p>I also play a ton of <a href="https://genomic.social/tags/boardgames" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>boardgames</span></a> and <a href="https://genomic.social/tags/videogames" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>videogames</span></a>. I love <a href="https://genomic.social/tags/mechanicalkeyboard" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>mechanicalkeyboard</span></a> (s) and own a <a href="https://genomic.social/tags/corne" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>corne</span></a> myself.</p>
Dr. Robert M Flight<p>I guess it might be time for an <a href="https://mastodon.social/tags/introduction" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>introduction</span></a> on this site.</p><p>I am a research analyst in academic <a href="https://mastodon.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a>. I'm interested in new computational <a href="https://mastodon.social/tags/metabolomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metabolomics</span></a> methods, <a href="https://mastodon.social/tags/transcriptomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>transcriptomics</span></a>, data integration, etc.</p><p>I know just enough <a href="https://mastodon.social/tags/statistics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>statistics</span></a> to be useful / dangerous, depending on your POV.</p><p>I use <a href="https://mastodon.social/tags/rstats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>rstats</span></a> heavily (in a lab that mostly uses <a href="https://mastodon.social/tags/python" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>python</span></a>), and believe in the value of graphing your data, as well as making work reproducible and as open as possible.</p>
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